BMC Microbiol 2010, 10:206 PubMedCentralPubMedCrossRef 5 Nechvat

BMC Microbiol 2010, here PubMedCentralPubMedCrossRef 5. Nechvatal JM, Ram JL, Basson MD, Namprachan P, Niec SR, Badsha KZ, Matherly LH, Majumdar AP, Kato I: Fecal collection, ambient preservation, and DNA extraction for PCR amplification CH5183284 ic50 of bacterial and human markers from human feces. J Microbiol Methods 2008,72(2):124–132.PubMedCrossRef 6. Vlckova K, Mrazek J, Kopecny J, Petrzelkova KJ: Evaluation of different storage methods to characterize the fecal bacterial communities of captive western lowland gorillas (Gorilla gorilla gorilla). J Microbiol Methods 2012,91(1):45–51.PubMedCrossRef 7. Wu J, Lin I, Hayes RB, Ahn J: Comparison of DNA extraction methods for human

oral microbiome research. Brit J Med & Med Res 2014,4(10):1980–1991. 8. Kuczynski J, Stombaugh J, Walters WA, Gonzalez A, Caporaso JG, Knight R: Using QIIME to analyze 16S rRNA gene sequences from microbial communities. Curr Protoc Bioinformatics 2011, Chapter 10:Unit 10 17. editoral board, Andreas D Baxevanis [et al] 9. Edgar RC: Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010,26(19):2460–2461.PubMedCrossRef 10. Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, Giannoukos G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methe B, DeSantis TZ, Petrosino JF, Knight R, Birren BW: Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced

PCR amplicons. Genome Res 2011,21(3):494–504.PubMedCentralPubMedCrossRef 11. Wang Q,

Garrity GM, Tiedje JM, Cole JR: Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Ivacaftor clinical trial Environ Microbiol 2007,73(16):5261–5267.PubMedCentralPubMedCrossRef 12. Price MN, Dehal PS, Arkin AP: FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol 2009,26(7):1641–1650.PubMedCentralPubMedCrossRef 13. Lozupone C, Hamady M, Knight R: UniFrac–an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinforma 2006, 7:371.CrossRef 14. Anderson BHMMJ: Fitting multivariate models to community data: a comment on distance based redundancy analysis. Ecology 2001,82(1):290–297. 15. Lauber CL, Zhou N, Gordon JI, Knight R, Fierer N: Effect of storage conditions on the assessment of bacterial community structure in soil crotamiton and human-associated samples. FEMS Microbiol Lett 2010,307(1):80–86.PubMedCentralPubMedCrossRef 16. Carroll IM, Ringel-Kulka T, Siddle JP, Klaenhammer TR, Ringel Y: Characterization of the fecal microbiota using high-throughput sequencing reveals a stable microbial community during storage. PLoS One 2012,7(10):e46953.PubMedCentralPubMedCrossRef 17. Cardona S, Eck A, Cassellas M, Gallart M, Alastrue C, Dore J, Azpiroz F, Roca J, Guarner F, Manichanh C: Storage conditions of intestinal microbiota matter in metagenomic analysis. BMC Microbiol 2012, 12:158.PubMedCentralPubMedCrossRef 18.

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