(PDF 116 KB) Additional file 3: Table S3. Secreted proteins from Leishmania donovanii and their corresponding Trypanosoma orthologs. contains
the list of 358 proteins from L. donovanii identified in Silverman et al., 2008 [20] which were blasted against the T. brucei genome. The blast e scores > e-50 were reported as positive identification of T. brucei orthologs. Functional categories were assigned to L. donovanii-secreted proteins as well as the transmembrane span prediction (TMHMM) of these proteins. (PDF 28 KB) Additional file 4: Table S4. Proteins identified in glycosome from T. brucei [19]. contains the list of 163 proteins from the glycosome proteome which were classified into functional categories (MapMan bins nomenclature). (PDF 10 KB) Additional file 5: Table S5. Proteins identified in total proteome from T. brucei [18]. contains the list of 1071 proteins from the total proteome which were STA-9090 classified into functional categories (MapMan bins nomenclature). (PDF 40 KB) Additional file 6: Table S6. Genome-wide prediction of secreted proteins using SignalP and secretomeP. contains the list of 1445 SignalP-predicted proteins (containing a putative transit peptide) from T. brucei and classified according to the number of predicted transmembrane spans (TMHMM prediction) (sheet 1). SecretomeP-predicted proteins from T. brucei were reported
according to their p-value (sheet 2). The 3 highest classes p>0.9, 0.9>p>0.8, and 0.8>p>0.7 containing, respectively, 128, 583, and 875
proteins and their number of predicted transmembrane spans (TMHMM prediction) were reported. (PDF 119 KB) Additional Protein Tyrosine Kinase inhibitor file 7: Table S7. Proteins identified in sucrose fractionated membranes from infected rat serum (IRS). contains the list of the IRS proteins. IRS proteins shared with ESPs or exosome are boxed in yellow and orange, respectively. (PDF 9 KB) Additional file 8: Table S8. Additional informations on proteins identified in secretome. contains the list of the proteins identified in 1D and BN-PAGE gels spots. Protein score, number of peptides Terminal deoxynucleotidyl transferase identified and number of peptides that fit to our stringent filter are provided. (PDF 90 KB) References 1. Robinson NP, Burman N, Melville SE, Barry JD: Predominance of duplicative VSG gene conversion in antigenic variation in African trypanosomes. Mol Cell Biol 1999, 19:5839–46.PubMed 2. Dubois ME, Demick KP, Mansfield JM: Trypanosomes expressing a mosaic variant surface glycoprotein coat escape early detection by the immune system. Infect Immun 2005, 73:2690–7.PubMedCrossRef 3. MacGregor P, Matthews KR: Modelling trypanosome chronicity: VSG dynasties and parasite density. Trends Parasitol 2008, 24:1–4.PubMedCrossRef 4. WHO: Human African Trypanosomiasis (sleeping sickness): epidemiological update. Wkly Epidemiol Rec 2006, 81:71–80. 5. Stich A, Abel PM, Krishna S: Human African Trypanosomiasis.